Inside the super organism you are correct, but the genome is influenced by outside forces as whole over the ages—and any place where this breaks down for long enough you eventually get two species instead of one.
Therefore outside groups can treat the species as a super organism in general, the individual members must be dealt with individually when there is previous loyalty to another member of the other species.
For example, an Englishman and his dog vs an eskimo and his dog.
The two humans may be against each other, the dogs may be against each other, but the opposite human/dog interactions would be standard if they weren’t already attached to other in-species members.
Inside the super organism you are correct, but the genome is influenced by outside forces as whole over the ages—and any place where this breaks down for long enough you eventually get two species instead of one.
Therefore outside groups can treat the species as a super organism in general, the individual members must be dealt with individually when there is previous loyalty to another member of the other species.
For example, an Englishman and his dog vs an eskimo and his dog. The two humans may be against each other, the dogs may be against each other, but the opposite human/dog interactions would be standard if they weren’t already attached to other in-species members.